e-mailed+Hojoon+to+get+the+chimeric+transcript+info+1-15-13

e-mail messages to Hojoon see e-mail thread here https://mail.google.com/mail/u/0/?ui=2&shva=1#search/hojoon/13c3f3c6522f4281

List of Chimeric Transcripts from Hojoon

--- 6 messages
 * your dissertation**


 * **Kurt Whittemore**  || Tue, Jan 15, 2013 at 10:23 AM ||
 * To: HoJoon Lee  ||
 * || Hi Hojoon,

I just finished reading your dissertation the other day. Very interesting! Nice job! I have one question right now though. In the image of the attached figure (Figure 3.2) to this email, do you have all of the lists of transcripts at every step in this figure. In your dissertation you give a table for the final PCR validated list (with the 48 chimeric transcripts), but I don't know where I can find the preliminary lists, and I would like to compare some of the genes from my cDNA expression library to these lists. If it is convenient for you to find these lists, could you send them to me! If it would take a lot of time and work for you to dig through cryptic files to find these lists, then I guess you don't need to worry about it, and I can do without the lists. Thanks for any help and information you can offer me!

Best, Kurt|| || ||   || **hojoon dissertation figure 3p2.png** 175K || || || ||

[Quoted text hidden] -- "Being happy doesn't mean everything is perfect. It means you've decided to see beyond the imperfections"
 * **HoJoon Lee**  || Tue, Jan 15, 2013 at 12:18 PM ||
 * To: Kurt Whittemore  ||
 * || I will send you Excel table later tonight. I might give it to Shen already.

Best Regards, HoJoon Lee || ||

[Quoted text hidden] || ||
 * **Kurt Whittemore**  || Tue, Jan 15, 2013 at 12:22 PM ||
 * To: HoJoon Lee  ||
 * || Great thanks! No I talked to Shen before. He just has one of the final tables. . like for the 48 pcr validated frameshift chimeric transcripts or something.


 * **Kurt Whittemore**  || Fri, Jan 18, 2013 at 10:20 AM ||
 * To: HoJoon Lee  ||
 * || Hi Hojoon, in addition to my request for that data, I have one more question. Did you already download the EST database and store it on the Biodesign Shared drive? If so, where is the file location of that database? Thanks again! I know that you are busy.

-Kurt

On Tue, Jan 15, 2013 at 12:18 PM, HoJoon Lee  wrote: [Quoted text hidden] || ||

S:\Research\Cancer_Eradication\HoJoon\HoJoon_DB\est_human_0907_2008 [Quoted text hidden] -- "Being happy doesn't mean everything is perfect. It means you've decided to see beyond the imperfections"
 * **HoJoon Lee**  || Wed, Jan 30, 2013 at 12:07 AM ||
 * To: Kurt Whittemore  ||
 * || You can find the EST sequences here:

Best Regards, HoJoon Lee || || ||   || **Total_FG_peptide_annotation2.xlsx** 185K || || || ||


 * **Kurt Whittemore**  || Wed, Jan 30, 2013 at 9:32 AM ||
 * To: HoJoon Lee  ||
 * || Great thanks! I'm glad that you already have the EST database downloaded somewhere. As for the spreadsheet. . I don't completely understand what I am looking at. There are no titles at the top of the columns. Maybe I should just be able to figure it out from looking at, but right now I'm not completely sure what everything is. Is this document a response to my question about figure 3p2 of your dissertation (I had an image of it attached in a previous email in this thread)? Do you have a folder that has each list in that figure separately? For example, I would look in the folder and I would see that this is the list with the 5,234 EST chimeric transcripts. This is the list with the 2,408 coding EST chimeric transcripts. This is the list with the 170 chimeric transcripts . . etc. If you don't have such a folder, then I guess don't worry about it. Perhaps the spreadsheet you sent has all of the information I need, and I just don't realize it.

Best, Kurt [Quoted text hidden] || ||

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