Work+on+paper+3-14-13

Need to find out the function of the sequence GRCm38.p1 (sequence 71) on my single clone scatterplot.

After some research, I found out that GRCm38.p1 is just a whole mouse chromosome sequence. I found that sequence 71 actually aligns best with the mouse mitochondrial genome.

Mouse mitochondria sequence GenBank: AP013031.1 http://www.ncbi.nlm.nih.gov/nucleotide/457866490?report=genbank&log$=nuclalign&blast_rank=1&RID=M45Y7W9S014

A sequencher alignment with the mouse mitochondrial sequence and sequence 71 can be found here: "C:\kurt\storage\CIM Research Folder\DR\2013\3-14-13\work on paper\mouse mitochondrial alignment 3-14-13.SPF"

Sequence 71 aligns with bases 6495-6939 of the mouse mitochondrial genome