selection+of+single+clone+experiment+data+030913

for the single clone selection I need to decide which set of data to use

I would like to look at a scatterplot for all of the sets of data from the 9-29-12 experiment as well as the 10-11-12 experiment

some data files

10-1-12_1to1000.csv file_path for R "C:/kurt/storage/CIM Research Folder/DR/2013/3-9-13/work on paper/sets of single clone data/10-1-12_1to1000.csv"

Basic program to use for R to plot the scatterplots with labels

scatterplot_data <- read.csv("C:/kurt/storage/CIM Research Folder/DR/2013/3-9-13/work on paper/sets of single clone data/10-1-12_1to1000.csv")
 * 1) Basically load data with a command like

plot(scatterplot_data$log2_fold_change, scatterplot_data$NEGLOG10_p_value)
 * 1) plot the data

library(calibrate)
 * 1) load the necessary library

textxy(scatterplot_data$log2_fold_change, scatterplot_data$NEGLOG10_p_value, scatterplot_data$Name)
 * 1) add labels to datapoints

several single clone scatterplots in one document found here "C:\kurt\storage\CIM Research Folder\DR\2013\3-9-13\work on paper\sets of single clone data\several single clone scatterplots.svg"

From looking at all of these scatterplots, I will choose the 10-1-12_1to1000 dataset since it has the largest range of p values and fold change values for data that was obtained the soonest after the experiment. Note that there was a rescan of this sample at a later time.