Test_Immunosignature_Data_020212

import java.text.DateFormat; import java.text.SimpleDateFormat; import java.util.*;

public class Test_Immunosignature_Data_020112 {

private UsefulTools useful_tools = new UsefulTools; private Histogram_Distribution_Finder hdf = new Histogram_Distribution_Finder; String intensity_data_directory = ""; String result_data_directory = ""; /** public static void main(String[] args) { // TODO Auto-generated method stub Test_Immunosignature_Data_020112 tid = new Test_Immunosignature_Data_020112; }
 * @param args

public Test_Immunosignature_Data_020112 {

System.out.println(useful_tools.getTime); this.intensity_data_directory = "L:\\\\storage\\\\CIM Research Folder\\\\kwhittem\\\\Records in CIM Folder\\\\Categorical Records\\\\Biodesign\\\\Entropy of Immunosignature\\\\Entropy of Immunosignature Experiment 011812\\\\intensities"; this.result_data_directory = "L:\\storage\\CIM Research Folder\\kwhittem\\Records in CIM Folder\\Categorical Records\\Biodesign\\Entropy of Immunosignature\\Entropy of Immunosignature Experiment 011812\\analysis";

/* ArrayList a406971_bot = useful_tools.storeTextFiletoArrayList(intensity_data_directory + "\\\\406971_bot.txt"); hdf.searchRangeOfDistributions(a406971_bot); Histogram_Distribution hd_a406971_bot = hdf.getMostComplexDistribution; useful_tools.createTextFile(result_data_directory, "406971_bot.txt", hd_a406971_bot.toString); ArrayList samples_to_process = useful_tools.stringWithCommasToArrayList("406971_top, 407166_bot, 407166_top, 407167_bot, 407167_top, 407788_bot, 407788_top"); for(int i=0; i<samples_to_process.size; i++) { processSample(samples_to_process.get(i).toString); }

System.out.println(useful_tools.getTime); }

public void processSample(String sample_name) { ArrayList raw_data = useful_tools.storeTextFiletoArrayList(intensity_data_directory + "\\" + sample_name + ".txt"); hdf.searchRangeOfDistributions(raw_data); Histogram_Distribution hd = hdf.getMostComplexDistribution; useful_tools.createTextFile(result_data_directory, sample_name + ".txt", hd.toString); } }