Code+I+may+want+to+write


 * Improvements to Context Independent Sequence Annotator
 * I think it would be nice if I could also enter a string of the sequence which would be placed below the annotations. This string would also have numbers below each character so they can quickly be searched in the svg file
 * It would be nice if I could enter alignment text output from Clustal Omega and have this annotated in the context independent sequence annotator. When I do this, it would also be nice to have the option of annotating exact matches rather than just alignments which may just align to things that are very similar, but not exactly the same (e.g. a short restriction site may align with something else in the sequence before it matches with the exact match)