Initial+Experiment+1-18-12

Pooled old and young influenza live attenuated PR8 mice samples were applied to the array. (two samples, four duplicates each)

GRP6 (Group 6) - Old GRP2 (Group 2) - Young
 * 6-7 aged infected mice (about a year and 2 months old), 1*10^4 pfu/dose, 40 days after infection
 * 10 young infected (about 6-8 weeks old), 1*10^4 pfu/dose, 40 days after infection

Zbig ran the slides 1-18-12 and they were aligned on 1-19-12. "C:\kurt\storage\CIM Research Folder\DR\2013\1-26-13\data_download\1920\407166_bot-GRP6_01182012.gpr"

Files saved at an address kind of like S:\Administration\Peptide Array Core\Entropy of Immunosignature Actual Location: S:\Administration\PeptideArrayCore\Entropy of Immunosignatures\01182012 Kurt or alternatively C:\kurt\storage\CIM Research Folder\kwhittem\Records in CIM Folder\Categorical Records\Biodesign\Entropy of Immunosignature\Entropy of Immunosignature Experiment 011812

some gprs "C:\kurt\storage\CIM Research Folder\DR\2013\1-26-13\data_download\1920\407166_bot-GRP6_01182012.gpr" "C:\kurt\storage\CIM Research Folder\DR\2013\1-26-13\data_download\1920\406971_top-GRP6_01182012.gpr" "C:\kurt\storage\CIM Research Folder\DR\2013\1-26-13\data_download\1920\406971_bot-GRP2_01182012.gpr" "C:\kurt\storage\CIM Research Folder\DR\2013\1-26-13\data_download\1920\406971_bot.txt" "C:\kurt\storage\CIM Research Folder\DR\2013\1-26-13\data_download\1920\406971_top.txt" "C:\kurt\storage\CIM Research Folder\DR\2013\1-26-13\data_download\1920\407166_bot.txt"

I would like to make a little program than can split a list of numbers into different bins. My ultimate goal would be to have a program that can split a distribution of numbers into bins with the bin size chosen so that there are the maximum number of bins with different numbers of elements.

I think the basic structure of the program would be something like:
 * create every possible distribution with every bin size and find the one with the most complex distribution (the greatest number of bins with a different number of elements in them)
 * Histogram_Distribution Object
 * original raw list of numbers
 * List of bins with their numbers
 * List of bins with the number of elements in each bin
 * total number of different bins with a different number of elements
 * bin size
 * create distribution(bin size, list of numbers for distribution)
 * set the bin size
 * create all of the bins (a bunch of ArrayLists in Java)
 * go through all of the numbers and assign each one to the appropriate bin
 * determine the number of bins with different numbers of elements and return this distribution

Histogram Distribution Object Code

GRP6(old) is associated with 407167_top, 406971_top, 407788_bot, 407166_bot GRP2(young) is associated with 407167_bot, 406971_bot, 407788_top, 407166_top

Powerpoint "C:\kurt\storage\CIM Research Folder\DR\2013\1-26-13\data_download\1920\Immunosignature Entropy Summary.ppt" "C:\kurt\storage\CIM Research Folder\DR\2013\1-26-13\data_download\1920\Immunosignature Entropy Summary 2 2-14-12.ppt" "C:\kurt\storage\CIM Research Folder\DR\2013\1-26-13\data_download\1920\Immunosignature Entropy Summary 3 3-2-12.ppt" "C:\kurt\storage\CIM Research Folder\DR\2013\1-26-13\data_download\1920\EXP800-187 Aged and Young summary figures.pptx" "C:\kurt\storage\CIM Research Folder\DR\2013\1-26-13\data_download\1920\Immunosignature Entropy Summary 4 3-27-12.ppt" (p values were added) "C:\kurt\storage\CIM Research Folder\DR\2013\1-26-13\data_download\1920\Immunosignature Entropy Summary 5 4-1-12.ppt" "C:\kurt\storage\CIM Research Folder\DR\2013\1-26-13\data_download\1920\Young vs Aged Distribution Figure 4-3-12.svg" "C:\kurt\storage\CIM Research Folder\DR\2013\1-26-13\data_download\1920\Immunosignature Entropy 6 4-3-12.pptx"