Work+112911+2124

Need to find an example glam2 command line call

glam2 directory: C:\cygwin\home\Owner\meme\meme_4.6.1\src

C:\cygwin\home\Owner\meme\meme_4.6.1\src>glam2 FATAL: Usage: glam2 [options] alphabet my_seqs.fa Main alphabets: p = proteins, n = nucleotides Main options (default settings): -h: show all options and their default settings -o: output directory; will not clobber existing files -O: output directory (glam2_out); allow clobbering -r: number of alignment runs (10) -n: end each run after this many iterations without improvement (10000) -2: examine both strands - forward and reverse complement -z: minimum number of sequences in the alignment (2) -a: minimum number of aligned columns (2) -b: maximum number of aligned columns (50) -w: initial number of aligned columns (20) -Q: run quietly