Java+Programs+to+Analyze+Array+Data

Note that I would like to be able to analyze data from these experiments in a more quick and automated fashion so I will write a little bit of code to do this so I don't have to keep repeating the same actions in Excel.

Here are some things I would like to be able to do.
 * extract data from a gpr file
 * median normalize
 * average with another array
 * find the pearson correlation with another array
 * subtract secondary
 * find p value comparing two different samples

"L:\storage\CIM Research Folder\DR\2012\5-11-12\ArrayAnalysis.txt" public link https://imtiewhl.livedrive.com/files/5061
 * Java Classes **
 * ArrayAnalysis**

"L:\storage\CIM Research Folder\DR\2012\5-11-12\UsefulTools.txt" public link []
 * Useful Tools**

Histogram Distribution Object Code