Work+100212

As mentioned previously I'd like to start to clean up my code around the filecomparison method

Here is the first version of the method that I removed "C:\kurt\storage\CIM Research Folder\DR\2012\10-2-12\code\removed code 1955 dot 10-2-12.txt" Here is the current version of the comparison code as of 10-2-12. This is version 2 right now, but it will become the default version. "C:\kurt\storage\CIM Research Folder\DR\2012\10-2-12\code\current version of comparison code as of 10-2-12.txt" Here is the 3rd version of the function that I removed "C:\kurt\storage\CIM Research Folder\DR\2012\10-2-12\code\removed code 2002 dot 10-2-12.txt"

2127 Okay the code seems to be mostly cleaned up and working. Now I just need to get all of the expect values from the big blast result output file.

removed commented code

"C:\kurt\storage\CIM Research Folder\DR\2012\10-2-12\code\removed code 2254.txt"

I have everything fixed up and cleaned. Now I'll try to run it overnight to see if it runs into some errors. If everything works, it will blast all the sequences in the first file with all of the sequences in the second file and also produce a table of the results.