Some+heatmap+info+5-7-12

I made a variety of different heatmaps which can be found here L:\storage\CIM Research Folder\DR\2012\5-7-12 and here L:\storage\CIM Research Folder\DR\2012\5-8-12

As of right now, I'm thinking I will use the single color scheme step earth color heatmaps in which the highest intensities are the whitest or palest. I think I will use this heatmap for the 329 SMC1fs peptides among the different absorbing conditions. L:\storage\CIM Research Folder\DR\2012\5-8-12\329 peptides earth heirarch clustered.svg This heatmap makes use of the heirarchically clustered SMC1fs data found here L:\storage\CIM Research Folder\DR\2012\5-7-12\data.txt and associated with this spreadsheet L:\storage\CIM Research Folder\DR\2012\5-5-12\smc1fs anal\329 peptides in blocking experiment.xlsx

For the cross-reactivity heatmap, I think I will use the map found here: L:\storage\CIM Research Folder\DR\2012\5-8-12\cross reactivity earth palette sat adj.svg which makes use of the data from here "L:\storage\CIM Research Folder\DR\2012\5-7-12\cross_reactivity_data.txt" and here "L:\storage\CIM Research Folder\DR\2012\5-3-12\figs from Shen\cross reaction\heatmap.xls"

Now I am going to try to make a heatmap of just the top 50 binding peptides in the rabbit SMC1fs 1:500 sample (3-18-12).

Now I think I'll use the single color scheme step earth color heatmap with the highest intensity as the whites or palest. I will use this heatmap for the 50 SMC1fs peptides among the different absorbing conditions. "L:\storage\CIM Research Folder\DR\2012\5-9-12\50_pep_heatmap.svg" This heatmap makes use of the heirarchically clustered SMC1fs data found here "L:\storage\CIM Research Folder\DR\2012\5-9-12\50_pep_heatmap.svg" and here L:\storage\CIM Research Folder\DR\2012\5-5-12\smc1fs anal\329 peptides in blocking experiment.xlsx

I also made a heatmap of the pqre-like peptides and the hee peptides. "L:\storage\CIM Research Folder\DR\2012\5-9-12 dot 2100\pqre like peptide heatmap.svg" "L:\storage\CIM Research Folder\DR\2012\5-9-12 dot 2100\hee peptide heatmap.svg"

The spreadsheet for this data can be found here "L:\storage\CIM Research Folder\DR\2012\5-9-12 dot 2100\intensities of peptides with motif.xlsx"