Entropy+calculation+for+all+human+normals+as+of+4-17-13

Zbig sent me the location information about where I can find some human normal samples 4-12-13 email https://mail.google.com/mail/u/0/?ui=2&shva=1#label/Career/13dff8639c7c0084 text from email from Zbig 4-12-13

workbook from Phil with some age information for some of the immunosignatures email found here: https://mail.google.com/mail/u/0/?ui=2&shva=1#label/Career/13e1520776ac1be4 "F:\kurt\storage\CIM Research Folder\DR\2013\4-17-13\workbook with age immunosig info\Workbook3.xlsx" In order to match up ids from this workbook with gpr ids I had to use numbers like 194 from the 2nd column and find normal donor gpr ids with this number in them. Note that I was only able to use numbers like 194 from the 2nd column and not numbers like 631845 from the 2nd column.

4-21-13 I think I'll try to get these entropy calculations started now.

I'll calculate the entropy of all the 2011 Normal gprs in this folder S:\Administration\PeptideArrayCore\2011 sample run\Cancer Immunosignature\All GPR files by Type entropy info here

"F:\kurt\storage\CIM Research Folder\DR\2013\4-24-13\entropy\2011 normal entropy" exact code of main class used to calculate all 2011 normals here: "C:\kurt\storage\CIM Research Folder\DR\2013\4-21-13\entropy\code of main class to calculate 2011 normals.txt"

2012 good gprs set 1 S:\Administration\PeptideArrayCore\2012 sample run\DTRA-2\Good Gpr files_ diseases 1-8 I processed these samples with similar code entropy info here

"F:\kurt\storage\CIM Research Folder\DR\2013\4-24-13\entropy\2012 good gprs diseases 1-8 entropy"

2012 good gprs set 2 S:\Administration\PeptideArrayCore\2012 sample run\LLNL Samples\Good-GPRs-set3 entropy info here "F:\kurt\storage\CIM Research Folder\DR\2013\4-24-13\entropy\2012 set 2"

2013 normals S:\Administration\PeptideArrayCore\2013 sample run\Normals-2013\Normals-2013-good-gprs entropy info here "F:\kurt\storage\CIM Research Folder\DR\2013\4-24-13\entropy\2013 normals"

4-26-13 Now that I have the normal entropy info for the different years, I would like to make a spreadsheet correlating the age of certain samples with their entropy.

To do this, I should make a spreadsheet that has "entropy info for all years as of 4-26-13" "F:\kurt\storage\CIM Research Folder\DR\2013\4-24-13\entropy\entropy info for all years as of 4-26-13.xlsx"

spreadsheet comparing age with entropy "F:\kurt\storage\CIM Research Folder\DR\2013\4-24-13\entropy\some entropy age associations 4-26-13.xlsx" A scatterplot of the data does not reveal any association of entropy with age. Perhaps if I used normalized data I would obtain different results.

--- 5-16-13

I recalculated the entropy for the normalized immunosignatures