Comparison+of+Sequencher+and+Clustal+Omega

Clustal Omega can sometimes produce better alignments than sequencher. However, there are some aspects that are better about Sequencher. Clustal Omega will not reverse complement the sequences if they need to be reversed. Clustal Omega will not indicate if there is a mismatch in an alignment column or not. Clustal Omega also does not have a nice overview view like sequencher has.