Amino+Acid+Substitution+Matrix

Amino Acid Substitution Matrix

aaindex
 * ​**http://www.genome.jp/aaindex/

Krupa knows a fair amount on this topic. She said that Guitope uses the Grantham matrix by default She and Rebecca were working on their own custom matrix. This matrix is called GUITOPE and can be found in the matrices.h file. Jack also had a matrix called interface_5a. S:\Research\DocInABox\People\Krupa\DTRA1\Umbrella approach to data analysis\CIM Matrix\matrices.h

Krupa also mentioned something about the "umbrella approach" to deconvoluting the array data. Here e-mail (9-18-12) can be found here: