References+11-18-12

Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J., 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Billings, P.B., Hoch, S.O., White, P.J., Carson, D.A. and Vaughan, J.H., 1983, Antibodies to the Epstein-Barr virus nuclear antigen and to rheumatoid arthritis nuclear antigen identify the same polypeptide. Coomber, D.W., 2002, Panning of antibody phage-display libraries. Standard protocols. Methods Mol Biol 178, 133-45. Folgori, A., Tafi, R., Meola, A., Felici, F., Galfre, G., Cortese, R., Monaci, P. and Nicosia, A., 1994, A general strategy to identify mimotopes of pathological antigens using only random peptide libraries and human sera. EMBO J 13, 2236-43. Frith, M.C., Saunders, N.F., Kobe, B. and Bailey, T.L., 2008, Discovering sequence motifs with arbitrary insertions and deletions. PLoS Comput Biol 4, e1000071. Gao, X., Pellois, J.P., Na, Y., Kim, Y., Gulari, E. and Zhou, X., 2004, High density peptide microarrays. In situ synthesis and applications. Mol Divers 8, 177-87. Hueber, W., Stanford University School of Medicine, S., California, GRECC, V.A.P.A.H.C.S., Palo Alto, California, Division of Immunology and Rheumatology, D.o.M., Stanford University School of Medicine, Palo Alto VA Health Care System, MC 154R, 3801 Miranda Avenue, Palo Alto, CA 94304, Kidd, B.A., Stanford University School of Medicine, S., California, GRECC, V.A.P.A.H.C.S., Palo Alto, California, Tomooka, B.H., Stanford University School of Medicine, S., California, GRECC, V.A.P.A.H.C.S., Palo Alto, California, Lee, B.J., Stanford University School of Medicine, S., California, GRECC, V.A.P.A.H.C.S., Palo Alto, California, Bruce, B., Stanford University School of Medicine, S., California, Fries, J.F., Stanford University School of Medicine, S., California, Sønderstrup, G., Stanford University School of Medicine, S., California, Monach, P., Harvard Medical School, B., Massachusetts, Drijfhout, J.W., Leiden University Medical Center, L., The Netherlands, van Venrooij, W.J., Radboud University Nijmegen, N., The Netherlands, Utz, P.J., Stanford University School of Medicine, S., California, Genovese, M.C., Stanford University School of Medicine, S., California, Robinson, W.H., Stanford University School of Medicine, S., California and GRECC, V.A.P.A.H.C.S., Palo Alto, California. Antigen microarray profiling of autoantibodies in rheumatoid arthritis. Arthritis & Rheumatism 52, 2645-2655. L-F., W. and M., Y., 2004-01-01, Epitope Identification and Discovery Using Phage Display Libraries: Applications in Vaccine Development and Diagnostics. Lam, K.S., Lake, D., Salmon, S.E., Smith, J., Chen, M.L., Wade, S., Abdul-Latif, F., Knapp, R.J., Leblova, Z., Ferguson, R.D., Krchnak, V.V., Sepetov, N.F. and Lebl, M. 1996 A One-Bead One-Peptide Combinatorial Library Method for B-Cell Epitope Mapping. In: Methods, Vol. 9, p. 482-93. Larionov, V.L., Karpova, T.S., Kouprina, N.Y. and Jouravleva, G.A., 1985, A mutant of Saccharomyces cerevisiae with impaired maintenance of centromeric plasmids. Curr Genet 10, 15-20. Larsen, J.E., Lund, O. and Nielsen, M., 2006, Improved method for predicting linear B-cell epitopes. Immunome Res 2, 2. Legutki, J.B., Magee, D.M., Stafford, P. and Johnston, S.A. 2010 A general method for characterization of humoral immunity induced by a vaccine or infection. In: Vaccine, Vol. 28. 2010 Elsevier Ltd, Netherlands, p. 4529-37. Lim, H.-S., Reddy, M.M., Xiao, X., Wilson, J., Wilson, R., Connell, S. and Kodadek, T., 2009, Rapid identification of improved protein ligands using peptoidmicroarrays 19, 3866–3869. Reineke, U., Ivascu, C., Schlief, M., Landgraf, C., Gericke, S., Zahn, G., Herzel, H., Volkmer-Engert, R. and Schneider-Mergener, J. 2002 Identification of distinct antibody epitopes and mimotopes from a peptide array of 5520 randomly generated sequences. In: J Immunol Methods, Vol. 267, Netherlands, p. 37-51. Schimmele, B. and Pluckthun, A. 2005 Identification of a functional epitope of the Nogo receptor by a combinatorial approach using ribosome display. In: J Mol Biol, Vol. 352, England, p. 229-41. Scott, J.K. and Smith, G.P., 1990, Searching for peptide ligands with an epitope library. Science 249, 386-90. Stafford, P., Halperin, R., Legutki, J.B., Magee, D.M., Galgiani, J. and Johnston, S.A., 2012, Physical characterization of the "immunosignaturing effect". Mol Cell Proteomics 11, M111 011593. Strunnikov, A.V., Larionov, V.L. and Koshland, D., 1993, SMC1: an essential yeast gene encoding a putative head-rod-tail protein is required for nuclear division and defines a new ubiquitous protein family. J Cell Biol 123, 1635-48. Usuda, S., Okamoto, H., Iwanari, H., Baba, K., Tsuda, F., Miyakawa, Y. and Mayumi, M., 1999, Serological detection of hepatitis B virus genotypes by ELISA with monoclonal antibodies to type-specific epitopes in the preS2-region product 80, 97–112. Yazdi, P.T., Wang, Y., Zhao, S., Patel, N., Lee, E.Y. and Qin, J., 2002, SMC1 is a downstream effector in the ATM/NBS1 branch of the human S-phase checkpoint. Genes Dev 16, 571-82.